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SRX5001542: GSM3466964: WT day30 rep2; Drosophila melanogaster; RNA-Seq
2 ILLUMINA (Illumina MiSeq) runs: 4.1M spots, 402.5M bases, 194.4Mb downloads

Submitted by: NCBI (GEO)
Study: Foxo signaling declines with age
show Abstracthide Abstract
We performed RNA-seq for WT and foxo mutant flies, by combining with Dr. Baihua's foxo chip-seq data, we found 101 foxo-repressed and 300 foxo-activated genes. By analyzing expression change of these genes during age, we found foxo-repressed genes became activated, while foxo-activated genes became repressed, suggesting foxo signaling declines with age. Overall design: Find potential foxo-regulated genes by comparing transcriptome differences between WT and foxo mutant flies, analyze their changes with age using RNA-sequencing data performed at 3d, 15d, 30d and 45d age of WT flies.
Sample: WT day30 rep2
SAMN10414376 • SRS4036258 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Heads were removed at the given age, RNA was harvested using Trizol reagent, and polyA tail RNAs were selected. NEBNext Ultra RNA library Prep Kit for Illumina (NEB, E7530L) was used with 1 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM3466964
Links:
Runs: 2 runs, 4.1M spots, 402.5M bases, 194.4Mb
Run# of Spots# of BasesSizePublished
SRR81815702,062,611205M98.7Mb2018-11-15
SRR81815711,987,967197.5M95.7Mb2018-11-15

ID:
6744096

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